PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA10g04800
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family C2H2
Protein Properties Length: 192aa    MW: 22189.7 Da    PI: 6.1754
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA10g04800genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.40.000113658123
                EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                y+C+ C++ F++   L  H++ H
  CA10g04800 36 YECNFCKRGFTNAQALGGHMNIH 58
                99*******************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.41E-73463No hitNo description
Gene3DG3DSA:3.30.160.603.4E-53462IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.2613663IPR007087Zinc finger, C2H2
PROSITE patternPS0002803858IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
MASEKNNNYS DSSSEDTMDR ESEKFNDDNT GMGRSYECNF CKRGFTNAQA LGGHMNIHRK  60
DKLKAKQNNS HHHQESTSRK LSQQEANYYA FDNSRFSAPN SSTHDEQHHY SRAQMNSYQF  120
FFQLPQNPSY QHVYTNHHDD SRSRHDNCYD ANNLSLRIGP TIVDDDEEDQ GGKKNVDVEL  180
DLELRLGYNN H*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754488e-55HG975448.1 Solanum pennellii chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016568141.11e-142PREDICTED: transcriptional regulator TAC1
TrEMBLK4CVY63e-86K4CVY6_SOLLC; Uncharacterized protein
STRINGSolyc09g089600.1.19e-86(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21362152
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17810.12e-17C2H2 family protein